Influences of quantum mechanically mixed electronic and vibrational pigment states in 2D electronic spectra of photosynthetic systems: Strong electronic coupling cases

In 2D electronic spectroscopy studies, long-lived quantum beats have recently been observed in photosynthetic systems, and it has been suggested that the beats are produced by quantum mechanically mixed electronic and vibrational states. Concerning the electronic-vibrational quantum mixtures, the impact of protein-induced fluctuations was examined by calculating the 2D electronic spectra of a weakly coupled dimer with vibrational modes in the resonant condition [J. Chem. Phys. 142, 212403 (2015)]. This analysis demonstrated that quantum mixtures of the vibronic resonance are rather robust under the influence of the fluctuations at cryogenic temperatures, whereas the mixtures are eradicated by the fluctuations at physiological temperatures. However, this conclusion cannot be generalized because the magnitude of the coupling inducing the quantum mixtures is proportional to the inter-pigment coupling. In this study, we explore the impact of the fluctuations on electronic-vibrational quantum mixtures in a strongly coupled dimer. with an off-resonant vibrational mode. Toward this end, we calculate electronic energy transfer (EET) dynamics and 2D electronic spectra of a dimer that corresponds to the most strongly coupled bacteriochlorophyll molecules in the Fenna-Matthews-Olson complex in a numerically accurate manner. The quantum mixtures are found to be robust under the exposure of protein-induced fluctuations at cryogenic temperatures, irrespective of the resonance. At 300 K, however, the quantum mixing is disturbed more strongly by the fluctuations, and therefore, the beats in the 2D spectra become obscure even in a strongly coupled dimer with a resonant vibrational mode. Further, the overall behaviors of the EET dynamics are demonstrated to be dominated by the environment and coupling between the 0-0 vibronic transitions as long as the Huang-Rhys factor of the vibrational mode is small.Comment: 20 pages, 4 figures. arXiv admin note: text overlap with arXiv:1505.0528

Insights into photosynthetic energy transfer gained from free-energy structure: Coherent transport, incoherent hopping, and vibrational assistance revisited

Giant strides in ultrashort laser pulse technology have enabled real-time observation of dynamical processes in complex molecular systems. Specifically, the discovery of oscillatory transients in the two-dimensional electronic spectra of photosynthetic systems stimulated a number of theoretical investigations exploring possible physical mechanisms of the remarkable quantum efficiency of light harvesting processes. However, the theories employed have reached a high degree of sophistication and have become complex, making it difficult to gain insights into microscopic processes and biologically significant questions. In this work, we revisit the elementary aspects of environment-induced fluctuations in the involved electronic energies and present a simple way to understand energy flow with the intuitive picture of relaxation in a funnel-type free-energy landscape. The presented free-energy description of energy transfer reveals that typical photosynthetic systems operate in an almost barrierless regime. The approach also provides insights into the distinction between coherent and incoherent energy transfer and criteria by which the necessity of the vibrational assistance is considered

Hamiltonian tomography of dissipative systems under limited access: A biomimetic case study

The identification of parameters in the Hamiltonian that describes complex many-body quantum systems is generally a very hard task. Recent attention has focused on such problems of Hamiltonian tomography for networks constructed with two-level systems. For open quantum systems, the fact that injected signals are likely to decay before they accumulate sufficient information for parameter estimation poses additional challenges. In this paper, we consider use of the gateway approach to Hamiltonian tomography \cite{Burgarth2009,Burgarth2009a} to complex quantum systems with a limited set of state preparation and measurement probes. We classify graph properties of networks for which the Hamiltonian may be estimated under equivalent conditions on state preparation and measurement. We then examine the extent to which the gateway approach may be applied to estimation of Hamiltonian parameters for network graphs with non-trivial topologies mimicking biomolecular systems.Comment: 6 page